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KAIST Develops Novel Candidiasis Treatment Overcoming Side Effects and Resistance
<(From left) Ph. D Candidate Ju Yeon Chung, Prof.Hyun Jung Chung, Ph.D candidate Seungju Yang, Ph.D candidate Ayoung Park, Dr. Yoon-Kyoung Hong from Asan Medical Center, Prof. Yong Pil Chong, Dr. Eunhee Jeon>
Candida, a type of fungus, which can spread throughout the body via the bloodstream, leading to organ damage and sepsis. Recently, the incidence of candidiasis has surged due to the increase in immunosuppressive therapies, medical implants, and transplantation. Korean researchers have successfully developed a next-generation treatment that, unlike existing antifungals, selectively acts only on Candida, achieving both high therapeutic efficacy and low side effects simultaneously.
KAIST (President Kwang Hyung Lee) announced on the 8th that a research team led by Professor Hyun-Jung Chung of the Department of Biological Sciences, in collaboration with Professor Yong Pil Jeong's team at Asan Medical Center, developed a gene-based nanotherapy (FTNx) that simultaneously inhibits two key enzymes in the Candida cell wall.
Current antifungal drugs for Candida have low target selectivity, which can affect human cells. Furthermore, their therapeutic efficacy is gradually decreasing due to the emergence of new resistant strains. Especially for immunocompromised patients, the infection progresses rapidly and has a poor prognosis, making the development of new treatments to overcome the limitations of existing therapies urgent.
The developed treatment can be administered systemically, and by combining gene suppression technology with nanomaterial technology, it effectively overcomes the structural limitations of existing compound-based drugs and successfully achieves selective treatment against only Candida.
The research team created a gold nanoparticle-based complex loaded with short DNA fragments called antisense oligonucleotides (ASO), which simultaneously target two crucial enzymes—β-1,3-glucan synthase (FKS1) and chitin synthase (CHS3)—important for forming the cell wall of the Candida fungus.
By applying a surface coating technology that binds to a specific glycolipid structure (a structure combining sugar and fat) on the Candida cell wall, a targeted delivery device was implemented. This successfully achieved a precise targeting effect, ensuring the complex is not delivered to human cells at all but acts selectively only on Candida.
<Figure 1: Overview of antifungal therapy design and experimental approach>
This complex, after entering Candida cells, cleaves the mRNA produced by the FKS1 and CHS3 genes, thereby inhibiting translation and simultaneously blocking the synthesis of cell wall components β-1,3-glucan and chitin. As a result, the
Candida cell wall loses its structural stability and collapses, suppressing bacterial survival and proliferation.
In fact, experiments using a systemic candidiasis model in mice confirmed the therapeutic effect: a significant reduction in
Candida count in the organs, normalization of immune responses, and a notable increase in survival rates were observed in the treated group.
Professor Hyun-Jung Chung, who led the research, stated, "This study presents a method to overcome the issues of human toxicity and drug resistance spread with existing treatments, marking an important turning point by demonstrating the applicability of gene therapy for systemic infections". She added, "We plan to continue research on optimizing administration methods and verifying toxicity for future clinical application."
This research involved Ju Yeon Chung and Yoon-Kyoung Hong as co-first authors , and was published in the international journal 'Nature Communications' on July 1st.
Paper Title: Effective treatment of systemic candidiasis by synergistic targeting of cell wall synthesis
DOI: 10.1038/s41467-025-60684-7
This research was supported by the Ministry of Health and Welfare and the National Research Foundation of Korea.
2025.07.08 View 108 -
KAIST Presents a Breakthrough in Overcoming Drug Resistance in Cancer – Hope for Treating Intractable Diseases like Diabetes
<(From the left) Prof. Hyun Uk Kim, Ph.D candiate Hae Deok Jung, Ph.D candidate Jina Lim, Prof.Yoosik Kim from the Department of Chemical and Biomolecular Engineering>
One of the biggest obstacles in cancer treatment is drug resistance in cancer cells. Conventional efforts have focused on identifying new drug targets to eliminate these resistant cells, but such approaches can often lead to even stronger resistance. Now, researchers at KAIST have developed a computational framework to predict key metabolic genes that can re-sensitize resistant cancer cells to treatment. This technique holds promise not only for a variety of cancer therapies but also for treating metabolic diseases such as diabetes.
On the 7th of July, KAIST (President Kwang Hyung Lee) announced that a research team led by Professors Hyun Uk Kim and Yoosik Kim from the Department of Chemical and Biomolecular Engineering had developed a computational framework that predicts metabolic gene targets to re-sensitize drug-resistant breast cancer cells. This was achieved using a metabolic network model capable of simulating human metabolism.
Focusing on metabolic alterations—key characteristics in the formation of drug resistance—the researchers developed a metabolism-based approach to identify gene targets that could enhance drug responsiveness by regulating the metabolism of drug-resistant breast cancer cells.
< Computational framework that can identify metabolic gene targets to revert the metabolic state of the drug-resistant cells to that of the drug-sensitive parental cells>
The team first constructed cell-specific metabolic network models by integrating proteomic data obtained from two different types of drug-resistant MCF7 breast cancer cell lines: one resistant to doxorubicin and the other to paclitaxel. They then performed gene knockout simulations* on all of the metabolic genes and analyzed the results.
*Gene knockout simulation: A computational method to predict changes in a biological network by virtually removing specific genes.
As a result, they discovered that suppressing certain genes could make previously resistant cancer cells responsive to anticancer drugs again. Specifically, they identified GOT1 as a target in doxorubicin-resistant cells, GPI in paclitaxel-resistant cells, and SLC1A5 as a common target for both drugs.
The predictions were experimentally validated by suppressing proteins encoded by these genes, which led to the re-sensitization of the drug-resistant cancer cells.
Furthermore, consistent re-sensitization effects were also observed when the same proteins were inhibited in other types of breast cancer cells that had developed resistance to the same drugs.
Professor Yoosik Kim remarked, “Cellular metabolism plays a crucial role in various intractable diseases including infectious and degenerative conditions. This new technology, which predicts metabolic regulation switches, can serve as a foundational tool not only for treating drug-resistant breast cancer but also for a wide range of diseases that currently lack effective therapies.”
Professor Hyun Uk Kim, who led the study, emphasized, “The significance of this research lies in our ability to accurately predict key metabolic genes that can make resistant cancer cells responsive to treatment again—using only computer simulations and minimal experimental data. This framework can be widely applied to discover new therapeutic targets in various cancers and metabolic diseases.”
The study, in which Ph.D. candidates JinA Lim and Hae Deok Jung from KAIST participated as co-first authors, was published online on June 25 in Proceedings of the National Academy of Sciences (PNAS), a leading multidisciplinary journal that covers top-tier research in life sciences, physics, engineering, and social sciences.
※ Title: Genome-scale knockout simulation and clustering analysis of drug-resistant breast cancer cells reveal drug sensitization targets ※ DOI: https://doi.org/10.1073/pnas.2425384122 ※ Authors: JinA Lim (KAIST, co-first author), Hae Deok Jung (KAIST, co-first author), Han Suk Ryu (Seoul National University Hospital, corresponding author), Yoosik Kim (KAIST, corresponding author), Hyun Uk Kim (KAIST, corresponding author), and five others.
This research was supported by the Ministry of Science and ICT through the National Research Foundation of Korea, and the Electronics and Telecommunications Research Institute (ETRI).
2025.07.08 View 149 -
Development of Core NPU Technology to Improve ChatGPT Inference Performance by Over 60%
Latest generative AI models such as OpenAI's ChatGPT-4 and Google's Gemini 2.5 require not only high memory bandwidth but also large memory capacity. This is why generative AI cloud operating companies like Microsoft and Google purchase hundreds of thousands of NVIDIA GPUs. As a solution to address the core challenges of building such high-performance AI infrastructure, Korean researchers have succeeded in developing an NPU (Neural Processing Unit)* core technology that improves the inference performance of generative AI models by an average of over 60% while consuming approximately 44% less power compared to the latest GPUs.
*NPU (Neural Processing Unit): An AI-specific semiconductor chip designed to rapidly process artificial neural networks.
On the 4th, Professor Jongse Park's research team from KAIST School of Computing, in collaboration with HyperAccel Inc. (a startup founded by Professor Joo-Young Kim from the School of Electrical Engineering), announced that they have developed a high-performance, low-power NPU (Neural Processing Unit) core technology specialized for generative AI clouds like ChatGPT.
The technology proposed by the research team has been accepted by the '2025 International Symposium on Computer Architecture (ISCA 2025)', a top-tier international conference in the field of computer architecture.
The key objective of this research is to improve the performance of large-scale generative AI services by lightweighting the inference process, while minimizing accuracy loss and solving memory bottleneck issues. This research is highly recognized for its integrated design of AI semiconductors and AI system software, which are key components of AI infrastructure.
While existing GPU-based AI infrastructure requires multiple GPU devices to meet high bandwidth and capacity demands, this technology enables the configuration of the same level of AI infrastructure using fewer NPU devices through KV cache quantization*. KV cache accounts for most of the memory usage, thereby its quantization significantly reduces the cost of building generative AI clouds.
*KV Cache (Key-Value Cache) Quantization: Refers to reducing the data size in a type of temporary storage space used to improve performance when operating generative AI models (e.g., converting a 16-bit number to a 4-bit number reduces data size by 1/4).
The research team designed it to be integrated with memory interfaces without changing the operational logic of existing NPU architectures. This hardware architecture not only implements the proposed quantization algorithm but also adopts page-level memory management techniques* for efficient utilization of limited memory bandwidth and capacity, and introduces new encoding technique optimized for quantized KV cache.
*Page-level memory management technique: Virtualizes memory addresses, as the CPU does, to allow consistent access within the NPU.
Furthermore, when building an NPU-based AI cloud with superior cost and power efficiency compared to the latest GPUs, the high-performance, low-power nature of NPUs is expected to significantly reduce operating costs.
Professor Jongse Park stated, "This research, through joint work with HyperAccel Inc., found a solution in generative AI inference lightweighting algorithms and succeeded in developing a core NPU technology that can solve the 'memory problem.' Through this technology, we implemented an NPU with over 60% improved performance compared to the latest GPUs by combining quantization techniques that reduce memory requirements while maintaining inference accuracy, and hardware designs optimized for this".
He further emphasized, "This technology has demonstrated the possibility of implementing high-performance, low-power infrastructure specialized for generative AI, and is expected to play a key role not only in AI cloud data centers but also in the AI transformation (AX) environment represented by dynamic, executable AI such as 'Agentic AI'."
This research was presented by Ph.D. student Minsu Kim and Dr. Seongmin Hong from HyperAccel Inc. as co-first authors at the '2025 International Symposium on Computer Architecture (ISCA)' held in Tokyo, Japan, from June 21 to June 25. ISCA, a globally renowned academic conference, received 570 paper submissions this year, with only 127 papers accepted (an acceptance rate of 22.7%).
※Paper Title: Oaken: Fast and Efficient LLM Serving with Online-Offline Hybrid KV Cache Quantization
※DOI: https://doi.org/10.1145/3695053.3731019
Meanwhile, this research was supported by the National Research Foundation of Korea's Excellent Young Researcher Program, the Institute for Information & Communications Technology Planning & Evaluation (IITP), and the AI Semiconductor Graduate School Support Project.
2025.07.07 View 202 -
KAIST Presents Game-Changing Technology for Intractable Brain Disease Treatment Using Micro OLEDs
<(From left)Professor Kyung Cheol Choi, Hyunjoo J. Lee, Somin Lee from the School of Electrical Engineering>
Optogenetics is a technique that controls neural activity by stimulating neurons expressing light-sensitive proteins with specific wavelengths of light. It has opened new possibilities for identifying causes of brain disorders and developing treatments for intractable neurological diseases. Because this technology requires precise stimulation inside the human brain with minimal damage to soft brain tissue, it must be integrated into a neural probe—a medical device implanted in the brain. KAIST researchers have now proposed a new paradigm for neural probes by integrating micro OLEDs into thin, flexible, implantable medical devices.
KAIST (President Kwang Hyung Lee) announced on the 6th of July that Professor Kyung Cheol Choi and researcher Hyunjoo J. Lee from the School of Electrical Engineering have jointly succeeded in developing an optogenetic neural probe integrated with flexible micro OLEDs.
Optical fibers have been used for decades in optogenetic research to deliver light to deep brain regions from external light sources. Recently, research has focused on flexible optical fibers and ultra-miniaturized neural probes that integrate light sources for single-neuron stimulation.
The research team focused on micro OLEDs due to their high spatial resolution and flexibility, which allow for precise light delivery to small areas of neurons. This enables detailed brain circuit analysis while minimizing side effects and avoiding restrictions on animal movement. Moreover, micro OLEDs offer precise control of light wavelengths and support multi-site stimulation, making them suitable for studying complex brain functions.
However, the device's electrical properties degrade easily in the presence of moisture or water, which limited their use as implantable bioelectronics. Furthermore, optimizing the high-resolution integration process on thin, flexible probes remained a challenge.
To address this, the team enhanced the operational reliability of OLEDs in moist, oxygen-rich environments and minimized tissue damage during implantation. They patterned an ultrathin, flexible encapsulation layer* composed of aluminum oxide and parylene-C (Al₂O₃/parylene-C) at widths of 260–600 micrometers (μm) to maintain biocompatibility.
*Encapsulation layer: A barrier that completely blocks oxygen and water molecules from the external environment, ensuring the longevity and reliability of the device.
When integrating the high-resolution micro OLEDs, the researchers also used parylene-C, the same biocompatible material as the encapsulation layer, to maintain flexibility and safety. To eliminate electrical interference between adjacent OLED pixels and spatially separate them, they introduced a pixel define layer (PDL), enabling the independent operation of eight micro OLEDs.
Furthermore, they precisely controlled the residual stress and thickness in the multilayer film structure of the device, ensuring its flexibility even in biological environments. This optimization allowed for probe insertion without bending or external shuttles or needles, minimizing mechanical stress during implantation.
Advanced Functional Materials-Conceptual diagram of a flexible neural probe for integrated optogenetics (Micro-OLED)>
As a result, the team developed a flexible neural probe with integrated micro OLEDs capable of emitting more than one milliwatt per square millimeter (mW/mm²) at 470 nanometers (nm), the optimal wavelength for activating channelrhodopsin-2. This is a significantly high light output for optogenetics and biomedical stimulation applications.
The ultrathin flexible encapsulation layer exhibited a low water vapor transmission rate of 2.66×10⁻⁵ g/m²/day, allowing the device to maintain functionality for over 10 years. The parylene-C-based barrier also demonstrated excellent performance in biological environments, successfully enabling the independent operation of the integrated OLEDs without electrical interference or bending issues.
Dr. Somin Lee, the lead author from Professor Choi’s lab, stated, “We focused on fine-tuning the integration process of highly flexible, high-resolution micro OLEDs onto thin flexible probes, enhancing their biocompatibility and application potential. This is the first reported development of such flexible OLEDs in a probe format and presents a new paradigm for using flexible OLEDs as implantable medical devices for monitoring and therapy.”
This study, with Dr. Somin Lee as the first author, was published online on March 26 in Advanced Functional Materials (IF 18.5), a leading international journal in the field of nanotechnology, and was selected as the cover article for the upcoming July issue.
※ Title: Advanced Micro-OLED Integration on Thin and Flexible Polymer Neural Probes for Targeted Optogenetic Stimulation ※ DOI: https://doi.org/10.1002/adfm.202420758
The research was supported by the Ministry of Science and ICT and the National Research Foundation of Korea through the Electronic Medicine Technology Development Program (Project title: Development of Core Source Technologies and In Vivo Validation for Brain Cognition and Emotion-Enhancing Light-Stimulating Electronic Medicine).
2025.07.07 View 72 -
KAIST researcher Se Jin Park develops 'SpeechSSM,' opening up possibilities for a 24-hour AI voice assistant.
<(From Left)Prof. Yong Man Ro and Ph.D. candidate Sejin Park>
Se Jin Park, a researcher from Professor Yong Man Ro’s team at KAIST, has announced 'SpeechSSM', a spoken language model capable of generating long-duration speech that sounds natural and remains consistent.
An efficient processing technique based on linear sequence modeling overcomes the limitations of existing spoken language models, enabling high-quality speech generation without time constraints.
It is expected to be widely used in podcasts, audiobooks, and voice assistants due to its ability to generate natural, long-duration speech like humans.
Recently, Spoken Language Models (SLMs) have been spotlighted as next-generation technology that surpasses the limitations of text-based language models by learning human speech without text to understand and generate linguistic and non-linguistic information. However, existing models showed significant limitations in generating long-duration content required for podcasts, audiobooks, and voice assistants. Now, KAIST researcher has succeeded in overcoming these limitations by developing 'SpeechSSM,' which enables consistent and natural speech generation without time constraints.
KAIST(President Kwang Hyung Lee) announced on the 3rd of July that Ph.D. candidate Sejin Park from Professor Yong Man Ro's research team in the School of Electrical Engineering has developed 'SpeechSSM,' a spoken. a spoken language model capable of generating long-duration speech.
This research is set to be presented as an oral paper at ICML (International Conference on Machine Learning) 2025, one of the top machine learning conferences, selected among approximately 1% of all submitted papers. This not only proves outstanding research ability but also serves as an opportunity to once again demonstrate KAIST's world-leading AI research capabilities.
A major advantage of Spoken Language Models (SLMs) is their ability to directly process speech without intermediate text conversion, leveraging the unique acoustic characteristics of human speakers, allowing for the rapid generation of high-quality speech even in large-scale models.
However, existing models faced difficulties in maintaining semantic and speaker consistency for long-duration speech due to increased 'speech token resolution' and memory consumption when capturing very detailed information by breaking down speech into fine fragments.
To solve this problem, Se Jin Park developed 'SpeechSSM,' a spoken language model using a Hybrid State-Space Model, designed to efficiently process and generate long speech sequences.
This model employs a 'hybrid structure' that alternately places 'attention layers' focusing on recent information and 'recurrent layers' that remember the overall narrative flow (long-term context). This allows the story to flow smoothly without losing coherence even when generating speech for a long time. Furthermore, memory usage and computational load do not increase sharply with input length, enabling stable and efficient learning and the generation of long-duration speech.
SpeechSSM effectively processes unbounded speech sequences by dividing speech data into short, fixed units (windows), processing each unit independently, and then combining them to create long speech.
Additionally, in the speech generation phase, it uses a 'Non-Autoregressive' audio synthesis model (SoundStorm), which rapidly generates multiple parts at once instead of slowly creating one character or one word at a time, enabling the fast generation of high-quality speech.
While existing models typically evaluated short speech models of about 10 seconds, Se Jin Park created new evaluation tasks for speech generation based on their self-built benchmark dataset, 'LibriSpeech-Long,' capable of generating up to 16 minutes of speech.
Compared to PPL (Perplexity), an existing speech model evaluation metric that only indicates grammatical correctness, she proposed new evaluation metrics such as 'SC-L (semantic coherence over time)' to assess content coherence over time, and 'N-MOS-T (naturalness mean opinion score over time)' to evaluate naturalness over time, enabling more effective and precise evaluation.
Through these new evaluations, it was confirmed that speech generated by the SpeechSSM spoken language model consistently featured specific individuals mentioned in the initial prompt, and new characters and events unfolded naturally and contextually consistently, despite long-duration generation. This contrasts sharply with existing models, which tended to easily lose their topic and exhibit repetition during long-duration generation.
PhD candidate Sejin Park explained, "Existing spoken language models had limitations in long-duration generation, so our goal was to develop a spoken language model capable of generating long-duration speech for actual human use." She added, "This research achievement is expected to greatly contribute to various types of voice content creation and voice AI fields like voice assistants, by maintaining consistent content in long contexts and responding more efficiently and quickly in real time than existing methods."
This research, with Se Jin Park as the first author, was conducted in collaboration with Google DeepMind and is scheduled to be presented as an oral presentation at ICML (International Conference on Machine Learning) 2025 on July 16th.
Paper Title: Long-Form Speech Generation with Spoken Language Models
DOI: 10.48550/arXiv.2412.18603
Ph.D. candidate Se Jin Park has demonstrated outstanding research capabilities as a member of Professor Yong Man Ro's MLLM (multimodal large language model) research team, through her work integrating vision, speech, and language. Her achievements include a spotlight paper presentation at 2024 CVPR (Computer Vision and Pattern Recognition) and an Outstanding Paper Award at 2024 ACL (Association for Computational Linguistics).
For more information, you can refer to the publication and accompanying demo: SpeechSSM Publications.
2025.07.04 View 412 -
KAIST Enhances Immunotherapy for Difficult-to-Treat Brain Tumors with Gut Microbiota
< Photo 1.(From left) Prof. Heung Kyu Lee, Department of Biological Sciences,
and Dr. Hyeon Cheol Kim>
Advanced treatments, known as immunotherapies that activate T cells—our body's immune cells—to eliminate cancer cells, have shown limited efficacy as standalone therapies for glioblastoma, the most lethal form of brain tumor. This is due to their minimal response to glioblastoma and high resistance to treatment.
Now, a KAIST research team has now demonstrated a new therapeutic strategy that can enhance the efficacy of immunotherapy for brain tumors by utilizing gut microbes and their metabolites. This also opens up possibilities for developing microbiome-based immunotherapy supplements in the future.
KAIST (President Kwang Hyung Lee) announced on July 1 that a research team led by Professor Heung Kyu Lee of the Department of Biological Sciences discovered and demonstrated a method to significantly improve the efficiency of glioblastoma immunotherapy by focusing on changes in the gut microbial ecosystem.
The research team noted that as glioblastoma progresses, the concentration of ‘tryptophan’, an important amino acid in the gut, sharply decreases, leading to changes in the gut microbial ecosystem. They discovered that by supplementing tryptophan to restore microbial diversity, specific beneficial strains activate CD8 T cells (a type of immune cell) and induce their infiltration into tumor tissues. Through a mouse model of glioblastoma, the research team confirmed that tryptophan supplementation enhanced the response of cancer-attacking T cells (especially CD8 T cells), leading to their increased migration to tumor sites such as lymph nodes and the brain.
In this process, they also revealed that ‘Duncaniella dubosii’, a beneficial commensal bacterium present in the gut, plays a crucial role. This bacterium helped T cells effectively redistribute within the body, and survival rates significantly improved when used in combination with immunotherapy (anti-PD-1).
Furthermore, it was demonstrated that even when this commensal bacterium was administered alone to germ-free mice (mice without any commensal microbes), the survival rate for glioblastoma increased. This is because the bacterium utilizes tryptophan to regulate the gut environment, and the metabolites produced in this process strengthen the ability of CD8 T cells to attack cancer cells.
Professor Heung Kyu Lee explained, "This research is a meaningful achievement, showing that even in intractable brain tumors where immune checkpoint inhibitors had no effect, a combined strategy utilizing gut microbes can significantly enhance treatment response."
Dr. Hyeon Cheol Kim of KAIST (currently a postdoctoral researcher at the Institute for Biological Sciences) participated as the first author. The research findings were published online in Cell Reports, an international journal in the life sciences, on June 26.
This research was conducted as part of the Basic Research Program and Bio & Medical Technology Development Program supported by the Ministry of Science and ICT and the National Research Foundation of Korea.
※Paper Title: Gut microbiota dysbiosis induced by brain tumor modulates the efficacy of immunotherapy
※DOI: https://doi.org/10.1016/j.celrep.2025.115825
2025.07.02 View 559 -
PICASSO Technique Drives Biological Molecules into Technicolor
The new imaging approach brings current imaging colors from four to more than 15 for mapping overlapping proteins
Pablo Picasso’s surreal cubist artistic style shifted common features into unrecognizable scenes, but a new imaging approach bearing his namesake may elucidate the most complicated subject: the brain. Employing artificial intelligence to clarify spectral color blending of tiny molecules used to stain specific proteins and other items of research interest, the PICASSO technique, allows researchers to use more than 15 colors to image and parse our overlapping proteins.
The PICASSO developers, based in Korea, published their approach on May 5 in Nature Communications.
Fluorophores — the staining molecules — emit specific colors when excited by a light, but if more than four fluorophores are used, their emitted colors overlap and blend. Researchers previously developed techniques to correct this spectral overlap by precisely defining the matrix of mixed and unmixed images. This measurement depends on reference spectra, found by identifying clear images of only one fluorophore-stained specimen or of multiple, identically prepared specimens that only contain a single fluorophore each.
“Such reference spectra measurement could be complicated to perform in highly heterogeneous specimens, such as the brain, due to the highly varied emission spectra of fluorophores depending on the subregions from which the spectra were measured,” said co-corresponding author Young-Gyu Yoon, professor in the School of Electrical Engineering at KAIST. He explained that the subregions would each need their own spectra reference measurements, making for an inefficient, time-consuming process. “To address this problem, we developed an approach that does not require reference spectra measurements.”
The approach is the “Process of ultra-multiplexed Imaging of biomolecules viA the unmixing of the Signals of Spectrally Overlapping fluorophores,” also known as PICASSO. Ultra-multiplexed imaging refers to visualizing the numerous individual components of a unit. Like a cinema multiplex in which each theater plays a different movie, each protein in a cell has a different role. By staining with fluorophores, researchers can begin to understand those roles.
“We devised a strategy based on information theory; unmixing is performed by iteratively minimizing the mutual information between mixed images,” said co-corresponding author Jae-Byum Chang, professor in the Department of Materials Science and Engineering, KAIST. “This allows us to get away with the assumption that the spatial distribution of different proteins is mutually exclusive and enables accurate information unmixing.”
To demonstrate PICASSO’s capabilities, the researchers applied the technique to imaging a mouse brain. With a single round of staining, they performed 15-color multiplexed imaging of a mouse brain. Although small, mouse brains are still complex, multifaceted organs that can take significant resources to map. According to the researchers, PICASSO can improve the capabilities of other imaging techniques and allow for the use of even more fluorophore colors.
Using one such imaging technique in combination with PICASSO, the team achieved 45-color multiplexed imaging of the mouse brain in only three staining and imaging cycles, according to Yoon.
“PICASSO is a versatile tool for the multiplexed biomolecule imaging of cultured cells, tissue slices and clinical specimens,” Chang said. “We anticipate that PICASSO will be useful for a broad range of applications for which biomolecules’ spatial information is important. One such application the tool would be useful for is revealing the cellular heterogeneities of tumor microenvironments, especially the heterogeneous populations of immune cells, which are closely related to cancer prognoses and the efficacy of cancer therapies.”
The Samsung Research Funding & Incubation Center for Future Technology supported this work. Spectral imaging was performed at the Korea Basic Science Institute Western Seoul Center.
-PublicationJunyoung Seo, Yeonbo Sim, Jeewon Kim, Hyunwoo Kim, In Cho, Hoyeon Nam, Yong-Gyu Yoon, Jae-Byum Chang, “PICASSO allows ultra-multiplexed fluorescence imaging of spatiallyoverlapping proteins without reference spectra measurements,” May 5, Nature Communications (doi.org/10.1038/s41467-022-30168-z)
-ProfileProfessor Jae-Byum ChangDepartment of Materials Science and EngineeringCollege of EngineeringKAIST
Professor Young-Gyu YoonSchool of Electrical EngineeringCollege of EngineeringKAIST
2022.06.22 View 12120 -
KAIST & LG U+ Team Up for Quantum Computing Solution for Ultra-Space 6G Satellite Networking
KAIST quantum computer scientists have optimized ultra-space 6G Low-Earth Orbit (LEO) satellite networking, finding the shortest path to transfer data from a city to another place via multi-satellite hops.
The research team led by Professor June-Koo Kevin Rhee and Professor Dongsu Han in partnership with LG U+ verified the possibility of ultra-performance and precision communication with satellite networks using D-Wave, the first commercialized quantum computer.
Satellite network optimization has remained challenging since the network needs to be reconfigured whenever satellites approach other satellites within the connection range in a three-dimensional space. Moreover, LEO satellites orbiting at 200~2000 km above the Earth change their positions dynamically, whereas Geo-Stationary Orbit (GSO) satellites do not change their positions. Thus, LEO satellite network optimization needs to be solved in real time.
The research groups formulated the problem as a Quadratic Unconstrained Binary Optimization (QUBO) problem and managed to solve the problem, incorporating the connectivity and link distance limits as the constraints.
The proposed optimization algorithm is reported to be much more efficient in terms of hop counts and path length than previously reported studies using classical solutions. These results verify that a satellite network can provide ultra-performance (over 1Gbps user-perceived speed), and ultra-precision (less than 5ms end-to-end latency) network services, which are comparable to terrestrial communication.
Once QUBO is applied, “ultra-space networking” is expected to be realized with 6G. Researchers said that an ultra-space network provides communication services for an object moving at up to 10 km altitude with an extreme speed (~ 1000 km/h). Optimized LEO satellite networks can provide 6G communication services to currently unavailable areas such as air flights and deserts.
Professor Rhee, who is also the CEO of Qunova Computing, noted, “Collaboration with LG U+ was meaningful as we were able to find an industrial application for a quantum computer. We look forward to more quantum application research on real problems such as in communications, drug and material discovery, logistics, and fintech industries.”
2022.06.17 View 10960 -
New Polymer Mesophase Structure Discovered
Bilayer-folded lamellar mesophase induced by random polymer sequence
Polymers, large molecules made up of repeating smaller molecules called monomers, are found in nearly everything we use in our day-to-day lives. Polymers can be natural or created synthetically. Natural polymers, also called biopolymers, include DNA, proteins, and materials like silk, gelatin, and collagen. Synthetic polymers make up many different kinds of materials, including plastic, that are used in constructing everything from toys to industrial fiber cables to brake pads.
As polymers are formed through a process called polymerization, the monomers are connected through a chain. As the chain develops, the structure of the polymer determines its unique physical and chemical properties. Researchers are continually studying polymers, how they form, how they are structured, and how they develop these unique properties. By understanding this information, scientists can develop new uses for polymers and create new materials that can be used in a wide variety of industries.
In a paper published in Nature Communications on May 4, researchers describe a new structure found in an aqueous solution of an amphiphilic copolymer, called a bilayer-folded lamellar mesophase, that has been discovered through a random copolymer sequence.
“A new mesophase is an important discovery as it shows a new way for molecules to self-organize,” said Professor Myungeun Seo at the Department of Chemistry at KAIST. “We were particularly thrilled to identify this bilayer-folded lamellar phase because pure bilayer membranes are difficult to fold thermodynamically.”
Researchers think that this mesophase structure comes from the sequence of the monomers within the copolymer. The way the different monomers arrange themselves in the chain that makes up a copolymer is important and can have implications for what the copolymer can do. Many copolymers are random, which means that their structure relies on how the monomers interact with each other. In this case, the interaction between the hydrophobic monomers associates the copolymer chains to conceal the hydrophobic domain from water. As the structure gets more complex, researchers have found that a visible order develops so that monomers can be matched up with the right pair.
“While we tend to think random means disorder, here we showed that a periodic order can spontaneously arise from the random copolymer sequence based on their collective behavior,” said Professor Seo. “We believe this comes from the sequence matching problem: finding a perfectly complementary pair for a long sequence is nearly impossible.”
This is what creates the unique structure of this newly discovered mesophase. The copolymer spontaneously folds and creates a multilamellar structure that is separated by water. A multilamellar structure refers to plate-like folds and the folded layers stack on top of each other. The resulting mesophase is birefringent, meaning light refracts through it, it is similar to liquid crystalline, and viscoelastic, which means that it is both viscous and elastic at the same time.
Looking ahead, researchers hope to learn more about this new mesophase and figure out how to control the outcome. Once more is understood about the mesophase and how it is formed, it’s possible that new mesophases could be discovered as more sequences are researched. “One of the obvious questions for us is how to control the folding frequency and adjust the folded height, which we are currently working to address. Ultimately, we want to understand how different multinary sequences can associate with another to create order and apply the knowledge to develop new materials,” said Professor Seo. The National Research Foundation, the Ministry of Education, and the Ministry of Science and ICT of Korea funded this research.
-PublicationMinjoong Shin, Hayeon Kim, Geonhyeong Park, Jongmin Park, Hyungju Ahn, Dong Ki Yoon, Eunji Lee, Myungeun Seo, “Bilayer-folded lamellar mesophase induced by random polymersequence,” May 4, 2022, Nature Communications (https://doi.org/10.1038/s41467-022-30122-z)
-ProfileProfessor Myungeun SeoMacromolecular Materials Chemistry Lab (https://nanopsg.kaist.ac.kr/)Department of ChemistryCollege of Natural SciencesKAIST
2022.06.17 View 10449 -
Professor Juho Kim’s Team Wins Best Paper Award at ACM CHI 2022
The research team led by Professor Juho Kim from the KAIST School of Computing won a Best Paper Award and an Honorable Mention Award at the Association for Computing Machinery Conference on Human Factors in Computing Systems (ACM CHI) held between April 30 and May 6.
ACM CHI is the world’s most recognized conference in the field of human computer interactions (HCI), and is ranked number one out of all HCI-related journals and conferences based on Google Scholar’s h-5 index. Best paper awards are given to works that rank in the top one percent, and honorable mention awards are given to the top five percent of the papers accepted by the conference.
Professor Juho Kim presented a total of seven papers at ACM CHI 2022, and tied for the largest number of papers. A total of 19 papers were affiliated with KAIST, putting it fifth out of all participating institutes and thereby proving KAIST’s competence in research.
One of Professor Kim’s research teams composed of Jeongyeon Kim (first author, MS graduate) from the School of Computing, MS candidate Yubin Choi from the School of Electrical Engineering, and Dr. Meng Xia (post-doctoral associate in the School of Computing, currently a post-doctoral associate at Carnegie Mellon University) received a best paper award for their paper, “Mobile-Friendly Content Design for MOOCs: Challenges, Requirements, and Design Opportunities”.
The study analyzed the difficulties experienced by learners watching video-based educational content in a mobile environment and suggests guidelines for solutions. The research team analyzed 134 survey responses and 21 interviews, and revealed that texts that are too small or overcrowded are what mainly brings down the legibility of video contents. Additionally, lighting, noise, and surrounding environments that change frequently are also important factors that may disturb a learning experience.
Based on these findings, the team analyzed the aptness of 41,722 frames from 101 video lectures for mobile environments, and confirmed that they generally show low levels of adequacy. For instance, in the case of text sizes, only 24.5% of the frames were shown to be adequate for learning in mobile environments. To overcome this issue, the research team suggested a guideline that may improve the legibility of video contents and help overcome the difficulties arising from mobile learning environments.
The importance of and dependency on video-based learning continue to rise, especially in the wake of the pandemic, and it is meaningful that this research suggested a means to analyze and tackle the difficulties of users that learn from the small screens of mobile devices. Furthermore, the paper also suggested technology that can solve problems related to video-based learning through human-AI collaborations, enhancing existing video lectures and improving learning experiences. This technology can be applied to various video-based platforms and content creation.
Meanwhile, a research team composed of Ph.D. candidate Tae Soo Kim (first author), MS candidate DaEun Choi, and Ph.D. candidate Yoonseo Choi from the School of Computing received an honorable mention award for their paper, “Stylette: styling the Web with Natural Language”.
The research team developed a novel interface technology that allows nonexperts who are unfamiliar with technical jargon to edit website features through speech. People often find it difficult to use or find the information they need from various websites due to accessibility issues, device-related constraints, inconvenient design, style preferences, etc. However, it is not easy for laymen to edit website features without expertise in programming or design, and most end up just putting up with the inconveniences. But what if the system could read the intentions of its users from their everyday language like “emphasize this part a little more”, or “I want a more modern design”, and edit the features automatically?
Based on this question, Professor Kim’s research team developed ‘Stylette’, a system in which AI analyses its users’ speech expressed in their natural language and automatically recommends a new style that best fits their intentions. The research team created a new system by putting together language AI, visual AI, and user interface technologies. On the linguistic side, a large-scale language model AI converts the intentions of the users expressed through their everyday language into adequate style elements. On the visual side, computer vision AI compares 1.7 million existing web design features and recommends a style adequate for the current website. In an experiment where 40 nonexperts were asked to edit a website design, the subjects that used this system showed double the success rate in a time span that was 35% shorter compared to the control group.
It is meaningful that this research proposed a practical case in which AI technology constructs intuitive interactions with users. The developed technology can be applied to existing design applications and web browsers in a plug-in format, and can be utilized to improve websites or for advertisements by collecting the natural intention data of users on a large scale.
2022.06.13 View 10331 -
Professor Sang Kil Cha Receives IEEE Test-of-Time Award
Professor Sang Kil Cha from the Graduate School of Information Security (GSIS) in the School of Computing received the Test-of-Time Award from IEEE Security & Privacy, a top conference in the field of information security.
The Test-of-Time Award recognizes the research papers that have influenced the field of information security the most over the past decade. Three papers were selected this year, and Professor Cha is the first Korean winner of the award.
The paper by Professor Cha was published in 2012 under the title, “Unleashing Mayhem on Binary Code”. It was the first to ever suggest an algorithm that automatically finds bugs in binary code and creates exploits that links them to an attack code.
The developed algorithm is a core technique used for world-class cyber security hacking competitions like the Cyber Grand Challenge, an AI hacking contest.
Starting with this research, Professor Cha has carried out various studies to develop technologies that can find bugs and vulnerabilities through binary analyses, and is currently developing B2R2, a Korean platform that can analyze various binary codes.
2022.06.13 View 6700 -
Professor Jae-Woong Jeong Receives Hyonwoo KAIST Academic Award
Professor Jae-Woong Jeong from the School of Electrical Engineering was selected for the Hyonwoo KAIST Academic Award, funded by the HyonWoo Cultural Foundation (Chairman Soo-il Kwak, honorary professor at Seoul National University Business School).
The Hyonwoo KAIST Academic Award, presented for the first time in 2021, is an award newly founded by the donations of Chairman Soo-il Kwak of the HyonWoo Cultural Foundation, who aims to reward excellent KAIST scholars who have made outstanding academic achievements.
Every year, through the strict evaluations of the selection committee of the HyonWoo Cultural Foundation and the faculty reward recommendation board, KAIST will choose one faculty member that may represent the school with their excellent academic achievement, and reward them with a plaque and 100 million won.
Professor Jae-Woong Jeong, the winner of this year’s award, developed the first IoT-based wireless remote brain neural network control system to overcome brain diseases, and has been leading the field. The research was published in 2021 in Nature Biomedical Engineering, one of world’s best scientific journals, and has been recognized as a novel technology that suggested a new vision for the automation of brain research and disease treatment. This study, led by Professor Jeong’s research team, was part of the KAIST College of Engineering Global Initiative Interdisciplinary Research Project, and was jointly studied by Washington University School of Medicine through an international research collaboration. The technology was introduced more than 60 times through both domestic and international media, including Medical Xpress, MBC News, and Maeil Business News.
Professor Jeong has also developed a wirelessly chargeable soft machine for brain transplants, and the results were published in Nature Communications. He thereby opened a new paradigm for implantable semi-permanent devices for transplants, and is making unprecedented research achievements.
2022.06.13 View 10043